{"mhci":[{"valid_next_step":"mhcii","piped_fields":["peptide_table.peptide","peptide_table.netmhcpan_el_icore","peptide_table.netmhcpan_ba_icore"]},{"valid_next_step":"cluster","piped_fields":["peptide_table.peptide","peptide_table.netmhcpan_el_icore","peptide_table.netmhcpan_ba_icore"]},{"valid_next_step":"pepmatch","piped_fields":["peptide_table.peptide","peptide_table.netmhcpan_el_icore","peptide_table.netmhcpan_ba_icore"]},{"valid_next_step":"pepx","piped_fields":["peptide_table.peptide","peptide_table.netmhcpan_el_icore","peptide_table.netmhcpan_ba_icore"]}],"mhcii":[{"valid_next_step":"mhci","piped_fields":["peptide_table.peptide","peptide_table.netmhciipan_el_core","peptide_table.netmhciipan_ba_core","peptide_table.netmhciipan_el-4.3_core","peptide_table.netmhciipan_ba-4.3_core","peptide_table.netmhciipan_el-4.2_core","peptide_table.netmhciipan_ba-4.2_core","peptide_table.combilb_core","peptide_table.nn_align_core","peptide_table.smm_align_core","peptide_table.tepitope_core","peptide_table.cd4episcore_core","consolidated_peptide_table.peptide"]},{"valid_next_step":"cluster","piped_fields":["peptide_table.peptide","peptide_table.netmhciipan_el_core","peptide_table.netmhciipan_ba_core","peptide_table.netmhciipan_el-4.3_core","peptide_table.netmhciipan_ba-4.3_core","peptide_table.netmhciipan_el-4.2_core","peptide_table.netmhciipan_ba-4.2_core","peptide_table.combilb_core","peptide_table.nn_align_core","peptide_table.smm_align_core","peptide_table.tepitope_core","peptide_table.cd4episcore_core","consolidated_peptide_table.peptide"]},{"valid_next_step":"pepmatch","piped_fields":["peptide_table.peptide","peptide_table.netmhciipan_el_core","peptide_table.netmhciipan_ba_core","peptide_table.netmhciipan_el-4.3_core","peptide_table.netmhciipan_ba-4.3_core","peptide_table.netmhciipan_el-4.2_core","peptide_table.netmhciipan_ba-4.2_core","peptide_table.combilb_core","peptide_table.nn_align_core","peptide_table.smm_align_core","peptide_table.tepitope_core","peptide_table.cd4episcore_core","consolidated_peptide_table.peptide"]},{"valid_next_step":"pepx","piped_fields":["peptide_table.peptide","peptide_table.netmhciipan_el_core","peptide_table.netmhciipan_ba_core","peptide_table.netmhciipan_el-4.3_core","peptide_table.netmhciipan_ba-4.3_core","peptide_table.netmhciipan_el-4.2_core","peptide_table.netmhciipan_ba-4.2_core","peptide_table.combilb_core","peptide_table.nn_align_core","peptide_table.smm_align_core","peptide_table.tepitope_core","peptide_table.cd4episcore_core","consolidated_peptide_table.peptide"]}],"cluster":[{"valid_next_step":"mhci","piped_fields":["peptide_table.peptide","peptide_table.cluster_consensus"]},{"valid_next_step":"mhcii","piped_fields":["peptide_table.peptide","peptide_table.cluster_consensus"]},{"valid_next_step":"pepmatch","piped_fields":["peptide_table.peptide","peptide_table.cluster_consensus"]},{"valid_next_step":"pepx","piped_fields":["peptide_table.peptide","peptide_table.cluster_consensus"]}],"pepmatch":[{"valid_next_step":"mhci","piped_fields":["peptide_table.peptide","peptide_table.matched_sequence"]},{"valid_next_step":"mhcii","piped_fields":["peptide_table.peptide","peptide_table.matched_sequence"]},{"valid_next_step":"cluster","piped_fields":["peptide_table.peptide","peptide_table.matched_sequence"]},{"valid_next_step":"pepx","piped_fields":["peptide_table.peptide","peptide_table.matched_sequence"]},{"valid_next_step":"bcell_sequence","piped_fields":["peptide_table.protein_id"]}],"pepx":[{"valid_next_step":"mhci","piped_fields":["peptide_table.peptide","peptide_gene_summary_table.peptide"]},{"valid_next_step":"mhcii","piped_fields":["peptide_table.peptide","peptide_gene_summary_table.peptide"]},{"valid_next_step":"cluster","piped_fields":["peptide_table.peptide","peptide_gene_summary_table.peptide"]},{"valid_next_step":"pepmatch","piped_fields":["peptide_table.peptide","peptide_gene_summary_table.peptide"]}],"phbr":[{"valid_next_step":"mhci","piped_fields":["peptide_table.mut_peptide","peptide_table.ref_peptide"]},{"valid_next_step":"mhcii","piped_fields":["peptide_table.mut_peptide","peptide_table.ref_peptide"]},{"valid_next_step":"cluster","piped_fields":["peptide_table.mut_peptide","peptide_table.ref_peptide"]},{"valid_next_step":"pepmatch","piped_fields":["peptide_table.mut_peptide","peptide_table.ref_peptide"]},{"valid_next_step":"pepx","piped_fields":["peptide_table.mut_peptide","peptide_table.ref_peptide"]},{"valid_next_step":"peptide_variant_comparison","piped_fields":[["peptide_table.ref_peptide","peptide_table.mut_peptide"]]}],"peptide_variant_comparison":[{"valid_next_step":"mhci","piped_fields":["peptide_table.peptide-peptidea","peptide_table.peptide-peptideb"]},{"valid_next_step":"mhcii","piped_fields":["peptide_table.peptide-peptidea","peptide_table.peptide-peptideb"]},{"valid_next_step":"cluster","piped_fields":["peptide_table.peptide-peptidea","peptide_table.peptide-peptideb"]},{"valid_next_step":"pepmatch","piped_fields":["peptide_table.peptide-peptidea","peptide_table.peptide-peptideb"]},{"valid_next_step":"pepx","piped_fields":["peptide_table.peptide-peptidea","peptide_table.peptide-peptideb"]}],"mutgen":[{"valid_next_step":"mhci","piped_fields":["unique_peptide.reference_peptide","unique_peptide.mutant_peptide","peptide.reference_peptide","peptide.mutant_peptide"]},{"valid_next_step":"mhcii","piped_fields":["unique_peptide.reference_peptide","unique_peptide.mutant_peptide","peptide.reference_peptide","peptide.mutant_peptide"]},{"valid_next_step":"cluster","piped_fields":["unique_peptide.reference_peptide","unique_peptide.mutant_peptide","peptide.reference_peptide","peptide.mutant_peptide"]},{"valid_next_step":"pepmatch","piped_fields":["unique_peptide.reference_peptide","unique_peptide.mutant_peptide","peptide.reference_peptide","peptide.mutant_peptide"]},{"valid_next_step":"pepx","piped_fields":["unique_peptide.reference_peptide","unique_peptide.mutant_peptide","peptide.reference_peptide","peptide.mutant_peptide"]},{"valid_next_step":"peptide_variant_comparison","piped_fields":[["unique_peptide.reference_peptide","unique_peptide.mutant_peptide"],["peptide.reference_peptide","peptide.mutant_peptide"]]},{"valid_next_step":"phbr","piped_fields":[["unique_peptide.mutant_peptide","unique_peptide.reference_peptide"],["peptide.mutant_peptide","peptide.reference_peptide"]]}],"bcell_sequence":[{"valid_next_step":"mhci","piped_fields":["linear_epitope_table.peptide"]},{"valid_next_step":"mhcii","piped_fields":["linear_epitope_table.peptide"]},{"valid_next_step":"cluster","piped_fields":["linear_epitope_table.peptide"]},{"valid_next_step":"pepmatch","piped_fields":["linear_epitope_table.peptide"]},{"valid_next_step":"pepx","piped_fields":["linear_epitope_table.peptide"]}],"bcell_structure":[{"valid_next_step":"mhci","piped_fields":["linear_epitope_table.peptide"]},{"valid_next_step":"mhcii","piped_fields":["linear_epitope_table.peptide"]},{"valid_next_step":"cluster","piped_fields":["linear_epitope_table.peptide"]},{"valid_next_step":"pepmatch","piped_fields":["linear_epitope_table.peptide"]},{"valid_next_step":"pepx","piped_fields":["linear_epitope_table.peptide"]}]}