{"name":["cluster"],"version":"0.1","necessary_parameters":[{"key":"input_sequence_text","display_name":"epitope sequence(s)","type":"str","default":null,"description":"epitope sequence(s) in PLAIN or FASTA format","example_input":">Mus Pep1\nLEQIHVLENSLVL\n>Mus Pep2\nFVEHIHVLENSLAFK\n>Mus Pep3\nGLYGREPDLSSDIKERFA\n>Mus Pep4\nEWFSILLASDKREKI\n>Mus Pep5\nDGFNTFTILKTDYDN\n>Mus Pep6\nNEKDGETFQLMGLY\n>Mus Pep7\nYGREPDLSLDIKEK\n>Mus Pep8\nLENSLVLKFHTVRDE\n>Mus Pep9\nAHLINEKDGETFQLM\n>Mus Pep10\nEEASSTGRNFNVQKINGEWHTIIL\n>Mus Pep11\nEKALVSSVRQRMKCS\n>Mus Pep12\nSRPFIFQEVIDLGGE\n>Mus Pep13\nNVEKINGEWHTIIL\n>Mus Pep14\nGIYYLNYDGFNTFTI\n>Mus Pep15\nDDVVASEALNSVWSGF\n>Mus Pep16\nGSMRVFVEHIHVLEN\n>Mus Pep17\nENIIDLTKTNRCLKA\n>Mus Pep18\nILGKLVKDYHLQFHR\n>Mus Pep19\nIGGPDDGVITPWQSSF\n>Mus Pep20\nDKETLSLEELKALLL\n>Mus Pep21\nLQSGFYSLSSLVTVP\n>Mus Pep22\nEELRRLAPITSDPTE\n>Mus Pep23\nTIFISLFLLSVCYSA\n>Rat Pep1\nASNKREKIEENGSMRVFMQH\n>Rat Pep2\nDIKEKFAKLCEAHGITRDNI\n>Rat Pep3\nEEASSTRGNLDVAKLNGDWF\n>Rat Pep4\nEENGSMRVFMQHIDVLENSL\n>Rat Pep5\nENSLGFKFRIKENGECRELY\n>Rat Pep6\nFMQHIDVLENSLGFKFRIKE\n>Rat Pep7\nFVEYDGGNTFTILKTDYDRY\n>Rat Pep8\nGDWFSIVVASNKREKIEENG\n>Rat Pep9\nGRTKDLSSDIKEKFAKLCEA\n>Rat Pep10\nKTPEDGEYFVEYDGGNTFTI\n>Rat Pep11\nLCEAHGITRDNIIDLTKTDR\n>Rat Pep12\nLINFKNGETFQLMVLYGRTK\n>Rat Pep13\nNLDVAKLNGDWFSIVVASNK\n>Rat Pep14\nRDNIIDLTKTDRCLQARG\n>Rat Pep15\nRELYLVAYKTPEDGEYFVEY\n>Rat Pep16\nRIKENGECRELYLVAYKTPE\n>Rat Pep17\nTFQLMVLYGRTKDLSSDIKE\n>Rat Pep18\nTFTILKTDYDRYVMFHLINF\n>Rat Pep19\nYDRYVMFHLINFKNGETFQL"}],"optional_parameters":[{"key":"threshold","display_name":"Sequence Identity Threshold","type":"float","description":"minimum sequence identity threshold, range from 0.1 to 1.0","default":0.7,"example_input":0.7},{"key":"minimum_length","display_name":"Minimum Peptide Length","type":"float","description":"0 means no minimum peptide length limit","default":1,"example_input":8},{"key":"maximum_length","display_name":"Maximum Peptide Length","type":"int","description":"0 means no maximum peptide length limit","default":1000,"example_input":10},{"key":"method","display_name":"clustering method","type":"str","description":"3 available methods: cluster, cluster-break, cliques","default":"cluster-break","example_input":"cluster-break"}]}